My top 109:
1. Batman Mask of the Phantasm.
2. Watership Down.
3. Fantastic Planet.
4. Lightyears aka Gandahar.
5. American Pop.
6. Chico and Rita.
7. Batman The Dark Knight Returns.
8. Yellow Submarine.
9. Pink Floyd The Wall.
10. Waltz with Bashir.
11. South Park Bigger Longer and Uncut.
12. Batman Under the Red Hood.
13. Felidae.
14. The Secret of NIMH.
15. The Phantom Tollbooth.
16. A Boy Named Charlie Brown.
17. Snoopy Come Home.
18. Mary and Max.
19. Wallace and Gromit in Curse of the Wererabbit.
20. Animal Farm.
21. Mary and Max.
22. The Dark Crystal. (This does count as an animated movie as it's listed sometimes as one in some sites due to puppetry)
23. Rock and Rule.
24. The Flight of Dragons.
25. Beavis and ButtHead Do America.
26. Fire and Ice.
27. Heavy Metal.
28. Akira.
29. Ninja Scroll.
30. Ghost in the Shell.
31. Spirited Away.
32. American Tail.
33. Princess Mononoke.
34. Nausicaa of the Valley of the Wind.
35. Wizards.
36. The Land Before Time.
37. Vampire Hunter D Bloodlust.
38. The Last Unicorn.
39. Wicked City.
40. Fist of the North Star.
41. Transformers The Movie.
42. Thief and The Cobbler.
43. Secret of Kellis.
44. Golgo 13 The Professional.
45. Howl's Moving Castle.
46. Kiki's Delivery Service.
47. Fritz The Cat.
48. Girl who Lept Through Time.
49. The BFG.
50. My Neighbor Totoro.
51. Cowboy Bebop The Movie.
52. Castle in The Sky.
53. Corpse Bride.
54. Rango.
55. Cloudy with a Chance of Meatballs.
56. Vampire Hunter D.
57. Starchaser Legend of Orin.
58. Ponyo.
59. Bill Plympton's The Tune.
60. Allegro Non Troppi.
61. Tiny Toon Adventures How i Spent My Summer Vacation.
62. Animalympics.
63. Metropolis.
64. Twice Upon a Time.
65. Shaun the Sheep.
66. Project A-Ko.
67. Peanuts Movie.
68. Robot Carnival.
69. Titan AE.
70. Street Fighter II The Animated Movie.
71. Bagi The Monster of Mighty Nature.
72. Grave of The Fireflies.
73. The Hobbit.
74. Perfect Blue.
75. I Married a Strange Person.
76. Waking Life.
77. Monster House.
78. Adventures of TinTin.
79. The Illusionist.
80. Bill Plympton's Mutant Aliens.
81. Time Masters.
82. Millenium Actress.
83. Paprika.
84. Ghost in The Shell 2 Innocence.
85. A Scanner Darkly.
86. Fantastic Mr. Fox.
87. Cats Don't Dance.
88. Hey Good Lookin'.
89. Ice Age.
90. Evengelion 1.0
91. Futurama Bender's Game.
92. Race for Your Life Charlie Brown.
93. Coraline.
94. Despicable Me.
95. Tripletes of Belleville.
96. Bugs Bunny and Road Runner movie.
97. Chipmunk Adventure.
98. 9.
99. Unico.
100. Unico and The Island of Magic.
101. The Adventures of Mark Twain.
102. Gi Joe The Movie.
103. All Dogs Go to Heaven.
104. American Tail Fievel Goes West.
105. Robot Carnival.
106. Aqua Teen Hunger Force The Movie.
107. Balto.
108. Wolf Children.
109. Lensman.
Guilty pleasure: Urotsukidoji Legend of the Overfiend.
Bookmarks